This is a problem it quite a few places, missing distances between fields and descriptor text. Here is one of the worse examples, where the alignment is way off. This is in the Absolute Scale dialogue box. The check boxes for Linking doesn't line up with their corresponding axes, and you can also see the missing distances between the descriptor text (X:, Y:, etc.) and their input fields.
http://i.imgur.com/NY32eht.png
http://i.imgur.com/NY32eht.png